Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs6125413 chr20:47257145 G/A 0 499 31.6 32.1 6.78 KM Plot
THCA rs6125428 chr20:47292823 C/G 3.69E-9 499 31.7 32.03 18.22 KM Plot
THCA rs6125439 chr20:47314634 G/A 3.82E-9 502 31.67 32.03 18.22 KM Plot
THCA rs6125446 chr20:47348161 C/G 8.06E-9 503 31.47 32.9 18.22 KM Plot
THCA rs6125448 chr20:47353178 G/A 8.13E-9 502 31.47 32.9 18.22 KM Plot
THCA rs61472961 chr7:32795153 G/A 9.81E-5 501 31.47 31.47 32.1 KM Plot
THCA rs61511565 chr2:87003972 TTATCTC/T 1.41E-9 498 32.35 27.85 20.78 KM Plot
THCA rs61541769 chr7:43943877 A/T 2.49E-9 503 31.27 33.52 30.83 KM Plot
THCA rs61677737 chr5:178228842 G/T 3.05E-5 500 31.47 33.97 24.9 KM Plot
THCA rs61859762 chr10:81664598 C/A 2.05E-9 497 31.72 31.43 14.52 KM Plot
THCA rs61859763 chr10:81671615 A/T 2.43E-9 494 31.7 31.45 14.52 KM Plot
THCA rs61859793 chr10:81686763 A/G 3.91E-5 501 31.7 31.57 23.92 KM Plot
THCA rs61862177 chr10:81613714 A/G 6.73E-10 488 31.73 31.03 14.52 KM Plot
THCA rs61862216 chr10:81643020 G/A 2.61E-9 494 31.7 31.45 14.52 KM Plot
THCA rs618850 chr11:63865622 A/G 0 503 31.93 27.83 17.77 KM Plot